Package: cstidy 2026.7.1

Richard Aubrey White

cstidy: Helpful Functions for Cleaning Surveillance Data

Helpful functions for the cleaning and manipulation of surveillance data, especially with regards to the creation and validation of panel data from individual level surveillance data.

Authors:Richard Aubrey White [aut, cre]

cstidy_2026.7.1.tar.gz
cstidy_2026.7.1.zip(r-4.7)cstidy_2026.7.1.zip(r-4.6)cstidy_2026.7.1.zip(r-4.5)
cstidy_2026.7.1.tgz(r-4.6-any)cstidy_2026.7.1.tgz(r-4.5-any)
cstidy_2026.7.1.tar.gz(r-4.7-any)cstidy_2026.7.1.tar.gz(r-4.6-any)
cstidy_2026.7.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
cstidy/json (API)

# Install 'cstidy' in R:
install.packages('cstidy', repos = c('https://niphr.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/niphr/cstidy/issues

Pkgdown/docs site:https://niphr.github.io

Datasets:

On CRAN:

Conda:

csverse

4.26 score 1 packages 670 downloads 14 exports 25 dependencies

Last updated from:5e37fd790d. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE163
source / vignettesOK193
linux-release-x86_64NOTE198
macos-release-arm64NOTE149
macos-oldrel-arm64NOTE112
windows-develNOTE91
windows-releaseNOTE98
windows-oldrelNOTE136
wasm-releaseOK144

Exports:%>%csfmt_rts_data_v1csfmt_rts_data_v2csfmt_rts_data_v3expand_time_togenerate_test_dataheal_time_csfmt_rts_data_v1heal_time_csfmt_rts_data_v2identify_data_structureremove_class_csfmt_rts_dataset_csfmt_rts_data_v1set_csfmt_rts_data_v2set_csfmt_rts_data_v3unique_time_series

Dependencies:clicpp11crayoncsdatacstimedata.tabledigestfarverggplot2gluegtableisobandlabelinglifecyclemagrittrR6RColorBrewerrlangS7scalesstringistringrvctrsviridisLitewithr

Data format (csfmt_rts_data_v2)
csfmt_rts_data_v2 | Style | Ordering of variables | Time | Approved events | Location | Ages | Sex | Unified columns | Smart assignment | Context-specific columns | Examples | In action | Expand time to | Time series | Summary | Identifying the data structure of one column | Reference (Location)

Last update: 2026-06-30
Started: 2023-12-28

Introduction
csfmt_rts_data_v2 | Smart assignment | Summary | Identifying the data structure of one column

Last update: 2026-06-30
Started: 2023-01-16

Benchmarks
set_csfmt_rts_data_v1

Last update: 2025-10-27
Started: 2023-04-25

Readme and manuals

Help Manual

Help pageTopics
Expand time toexpand_time_to
Generate test datagenerate_test_data
Provides corresponding healed times (deprecated)heal_time_csfmt_rts_data_v1
Provides corresponding healed timesheal_time_csfmt_rts_data_v2
Hash the data structure of a dataset for a given columnidentify_data_structure identify_data_structure.csfmt_rts_data_v2 identify_data_structure.tbl_Microsoft SQL Server
Covid-19 data for PCR-confirmed cases in Norway (nation and county)nor_covid19_cases_by_time_location_csfmt_rts_v1
Norwegian Covid-19 data for ICU and hospitalizationnor_covid19_icu_and_hospitalization_csfmt_rts_v1
Remove class csfmt_rts_data_*remove_class_csfmt_rts_data
Convert data.table to csfmt_rts_data_v1 (deprecated)csfmt_rts_data_v1 set_csfmt_rts_data_v1
Convert data.table to csfmt_rts_data_v2csfmt_rts_data_v2 set_csfmt_rts_data_v2
Convert a data.table to csfmt_rts_data_v3 (clean csfmt; explicit healing)csfmt_rts_data_v3 set_csfmt_rts_data_v3
Unique time seriesunique_time_series