{ "_id": "6a463d4d6ff6f23575547ad6", "Package": "cstidy", "Title": "Helpful Functions for Cleaning Surveillance Data", "Version": "2026.7.1", "Authors@R": "c(\nperson(c(\"Richard\",\"Aubrey\"), \"White\", email = \"hello@rwhite.no\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6747-1726\"))\n)", "Description": "Helpful functions for the cleaning and manipulation of\nsurveillance data, especially with regards to the creation and\nvalidation of panel data from individual level surveillance\ndata.", "License": "MIT + file LICENSE", "URL": "https://niphr.github.io/cstidy/, https://github.com/niphr/cstidy", "BugReports": "https://github.com/niphr/cstidy/issues", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Config/Needs/website": "niphr/cstemplate", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://niphr.r-universe.dev", "Date/Publication": "2026-07-02 08:44:06 UTC", "RemoteUrl": "https://github.com/niphr/cstidy", "RemoteRef": "HEAD", "RemoteSha": "5e37fd790db8317860c106042371143cd4338bea", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-02 10:21:22 UTC", "User": "root" }, "Author": "Richard Aubrey White [aut, cre] (ORCID:\n)", "Maintainer": "Richard Aubrey White ", "MD5sum": "30e0c62bab10ce96c5655eb9e2c9a891", "_user": "niphr", "_type": "src", "_file": "cstidy_2026.7.1.tar.gz", "_fileid": "923ccd4e314e2e66cb3be3bddff3fbc8dfc4dd2e8d289f5c156330e110fff3ed", "_filesize": 566241, "_sha256": "923ccd4e314e2e66cb3be3bddff3fbc8dfc4dd2e8d289f5c156330e110fff3ed", "_created": "2026-07-02T10:21:22.000Z", "_published": "2026-07-02T10:28:29.548Z", "_distro": "resolute", "_jobs": [ { "job": 84747205866, "time": 163, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8035819230" }, { "job": 84747205881, "time": 198, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8035831822" }, { "job": 84747205840, "time": 112, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8035901663" }, { "job": 84747205773, "time": 149, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8035906303" }, { "job": 84746612902, "time": 193, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8035754020" }, { "job": 84747205809, "time": 144, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8035811815" }, { "job": 84747205813, "time": 91, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8035790410" }, { "job": 84747205824, "time": 136, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8035808493" }, { "job": 84747205797, "time": 98, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8035793702" } ], "_buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/niphr/cstidy", "_commit": { "id": "5e37fd790db8317860c106042371143cd4338bea", "author": "Richard Aubrey White ", "committer": "Richard Aubrey White ", "message": "Add set_csfmt_rts_data_v3 to the pkgdown reference index\n", "time": 1782981846 }, "_maintainer": { "name": "Richard Aubrey White", "email": "hello@rwhite.no", "login": "raubreywhite", "orcid": "0000-0002-6747-1726", "twitter": "@raubreywhite", "description": "Applied infectious diseases statistician. Head of @norsyss within @folkehelseinstituttet \n", "uuid": 1532091 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "data.table", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "csdata", "role": "Imports" }, { "package": "cstime", "role": "Imports" }, { "package": "crayon", "role": "Imports" }, { "package": "digest", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "rstudioapi", "role": "Suggests" }, { "package": "glue", "role": "Suggests" }, { "package": "gt", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "purrr", "role": "Suggests" } ], "_owner": "niphr", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-34", "n": 2 }, { "week": "2025-44", "n": 3 }, { "week": "2025-52", "n": 4 }, { "week": "2026-27", "n": 12 } ], "_tags": [], "_topics": [ "csverse" ], "_stars": 0, "_contributors": [ { "user": "raubreywhite", "count": 70, "uuid": 1532091 }, { "user": "chizapoth", "count": 1, "uuid": 32897643 } ], "_userbio": { "uuid": 244534951, "type": "organization", "name": "Norwegian Institute of Public Health - R codebases", "followers": 2, "description": "The Norwegian Institute of Public Health is a government agency under the Ministry of Health and Care Services." }, "_downloads": { "count": 670, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cstidy" }, "_devurl": "https://github.com/niphr/cstidy", "_pkgdown": "https://niphr.github.io/cstidy/", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/cstidy.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_realowner": "raubreywhite", "_cranurl": false, "_releases": [ { "version": "2023.5.24", "date": "2023-05-24" }, { "version": "2025.10.27", "date": "2025-10-27" } ], "_exports": [ "%>%", "csfmt_rts_data_v1", "csfmt_rts_data_v2", "csfmt_rts_data_v3", "expand_time_to", "generate_test_data", "heal_time_csfmt_rts_data_v1", "heal_time_csfmt_rts_data_v2", "identify_data_structure", "remove_class_csfmt_rts_data", "set_csfmt_rts_data_v1", "set_csfmt_rts_data_v2", "set_csfmt_rts_data_v3", "unique_time_series" ], "_datasets": [ { "name": "nor_covid19_cases_by_time_location_csfmt_rts_v1", "title": "Covid-19 data for PCR-confirmed cases in Norway (nation and county)", "object": "nor_covid19_cases_by_time_location_csfmt_rts_v1", "class": [ "csfmt_rts_data_v1", "data.table", "data.frame" ], "fields": [ "granularity_time", "granularity_geo", "country_iso3", "location_code", "border", "age", "sex", "isoyear", "isoweek", "isoyearweek", "season", "seasonweek", "calyear", "calmonth", "calyearmonth", "date", "covid19_cases_testdate_n", "covid19_cases_testdate_pr100000" ], "rows": 11028, "table": true, "tojson": true }, { "name": "nor_covid19_icu_and_hospitalization_csfmt_rts_v1", "title": "Norwegian Covid-19 data for ICU and hospitalization", "object": "nor_covid19_icu_and_hospitalization_csfmt_rts_v1", "class": [ "csfmt_rts_data_v1", "data.table", "data.frame" ], "fields": [ "granularity_time", "granularity_geo", "country_iso3", "location_code", "border", "age", "sex", "isoyear", "isoweek", "isoyearweek", "season", "seasonweek", "calyear", "calmonth", "calyearmonth", "date", "icu_with_positive_pcr_n", "hospitalization_with_covid19_as_primary_cause_n" ], "rows": 919, "table": true, "tojson": true } ], "_help": [ { "page": "expand_time_to", "title": "Expand time to", "concept": [ "csfmt_rts_data" ], "topics": [ "expand_time_to" ] }, { "page": "generate_test_data", "title": "Generate test data", "topics": [ "generate_test_data" ] }, { "page": "heal_time_csfmt_rts_data_v1", "title": "Provides corresponding healed times (deprecated)", "topics": [ "heal_time_csfmt_rts_data_v1" ] }, { "page": "heal_time_csfmt_rts_data_v2", "title": "Provides corresponding healed times", "topics": [ "heal_time_csfmt_rts_data_v2" ] }, { "page": "identify_data_structure", "title": "Hash the data structure of a dataset for a given column", "concept": [ "csfmt_rts_data" ], "topics": [ "identify_data_structure", "identify_data_structure.csfmt_rts_data_v2", "identify_data_structure.tbl_Microsoft SQL Server" ] }, { "page": "nor_covid19_cases_by_time_location_csfmt_rts_v1", "title": "Covid-19 data for PCR-confirmed cases in Norway (nation and county)", "topics": [ "nor_covid19_cases_by_time_location_csfmt_rts_v1" ] }, { "page": "nor_covid19_icu_and_hospitalization_csfmt_rts_v1", "title": "Norwegian Covid-19 data for ICU and hospitalization", "topics": [ "nor_covid19_icu_and_hospitalization_csfmt_rts_v1" ] }, { "page": "remove_class_csfmt_rts_data", "title": "Remove class csfmt_rts_data_*", "concept": [ "csfmt_rts_data" ], "topics": [ "remove_class_csfmt_rts_data" ] }, { "page": "set_csfmt_rts_data_v1", "title": "Convert data.table to csfmt_rts_data_v1 (deprecated)", "concept": [ "csfmt_rts_data" ], "topics": [ "csfmt_rts_data_v1", "set_csfmt_rts_data_v1" ] }, { "page": "set_csfmt_rts_data_v2", "title": "Convert data.table to csfmt_rts_data_v2", "concept": [ "csfmt_rts_data" ], "topics": [ "csfmt_rts_data_v2", "set_csfmt_rts_data_v2" ] }, { "page": "set_csfmt_rts_data_v3", "title": "Convert a data.table to csfmt_rts_data_v3 (clean csfmt; explicit healing)", "concept": [ "csfmt_rts_data" ], "topics": [ "csfmt_rts_data_v3", "set_csfmt_rts_data_v3" ] }, { "page": "unique_time_series", "title": "Unique time series", "concept": [ "csfmt_rts_data" ], "topics": [ "unique_time_series" ] } ], "_pkglogo": "https://github.com/niphr/cstidy/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/niphr/cstidy/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "crayon", "csdata", "cstime", "data.table", "digest", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "magrittr", "R6", "RColorBrewer", "rlang", "S7", "scales", "stringi", "stringr", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "benchmarks.Rmd", "filename": "benchmarks.html", "title": "Benchmarks", "engine": "knitr::rmarkdown", "headings": [ "set_csfmt_rts_data_v1" ], "created": "2023-04-25 10:38:08", "modified": "2025-10-27 10:41:13", "commits": 5 }, { "source": "csfmt_rts_data_v2.Rmd", "filename": "csfmt_rts_data_v2.html", "title": "Data format (csfmt_rts_data_v2)", "engine": "knitr::rmarkdown", "headings": [ "csfmt_rts_data_v2", "Style", "Ordering of variables", "Time", "Approved events", "Location", "Ages", "Sex", "Unified columns", "Smart assignment", "Context-specific columns", "Examples", "In action", "Expand time to", "Time series", "Summary", "Identifying the data structure of one column", "Reference (Location)" ], "created": "2023-12-28 17:50:07", "modified": "2026-06-30 06:06:53", "commits": 3 }, { "source": "cstidy.Rmd", "filename": "cstidy.html", "title": "Introduction", "engine": "knitr::rmarkdown", "headings": [ "csfmt_rts_data_v2", "Smart assignment", "Summary", "Identifying the data structure of one column" ], "created": "2023-01-16 10:42:17", "modified": "2026-06-30 06:06:53", "commits": 5 } ], "_score": 4.2552725051033065, "_indexed": false, "_nocasepkg": "cstidy", "_universes": [ "niphr" ], "_indexurl": "https://raubreywhite.r-universe.dev/cstidy", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2026.7.1", "date": "2026-07-02T10:23:48.000Z", "distro": "resolute", "commit": "5e37fd790db8317860c106042371143cd4338bea", "fileid": "1dafada437f8754f33307eed8fc0ef92efb3c831615527f708f6be9c5828f6bd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714" }, { "r": "4.6.1", "os": "linux", "version": "2026.7.1", "date": "2026-07-02T10:24:23.000Z", "distro": "resolute", "commit": "5e37fd790db8317860c106042371143cd4338bea", "fileid": "258e1f8e3f62bd82901983b9bf07ff9d2e33b2e709d115b5f03663007ff6115c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714" }, { "r": "4.5.3", "os": "mac", "version": "2026.7.1", "date": "2026-07-02T10:27:32.000Z", "commit": "5e37fd790db8317860c106042371143cd4338bea", "fileid": "4056049ed70452a352d100732bd9ed06f22986093da7c8c5f417ae86dcf6cf07", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714" }, { "r": "4.6.1", "os": "mac", "version": "2026.7.1", "date": "2026-07-02T10:27:34.000Z", "commit": "5e37fd790db8317860c106042371143cd4338bea", "fileid": "01e3b7d16bc1f6708299d34f68b5b37361e11ce9b14e448464c81c852007282e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714" }, { "r": "4.6.0", "os": "wasm", "version": "2026.7.1", "date": "2026-07-02T10:24:02.000Z", "commit": "5e37fd790db8317860c106042371143cd4338bea", "fileid": "7b73d123f1384e1a59a1d53fc2efec1cdfc58b813790bae0fc88423a2cd493d3", "status": "success", "buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714" }, { "r": "4.7.0", "os": "win", "version": "2026.7.1", "date": "2026-07-02T10:22:30.000Z", "commit": "5e37fd790db8317860c106042371143cd4338bea", "fileid": "8f47f0f6e72f052ff2842ee8f612457705acb9f1f370845b14d6c5ffe96cb49f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714" }, { "r": "4.5.3", "os": "win", "version": "2026.7.1", "date": "2026-07-02T10:23:13.000Z", "commit": "5e37fd790db8317860c106042371143cd4338bea", "fileid": "d7334acd4d1d074659f461c023166136da6571104277f91406dbfbecc027b106", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714" }, { "r": "4.6.1", "os": "win", "version": "2026.7.1", "date": "2026-07-02T10:22:37.000Z", "commit": "5e37fd790db8317860c106042371143cd4338bea", "fileid": "6228c53075d88f1bcd61316d071131eea7fc54210ec086e97d671fdee3d7680c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/niphr/actions/runs/28582680714" } ] }